IL_9I88_039

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9I88|1|A|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_039 not in the Motif Atlas

Homologous match to IL_7A0S_038

Geometric discrepancy: 0.1942

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9I88|1|A|G|1075
9I88|1|A|A|1076
9I88|1|A|U|1077
9I88|1|A|G|1078
*
9I88|1|A|C|1165
9I88|1|A|G|1166
9I88|1|A|C|1167

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain K

Large ribosomal subunit protein uL6

Chain P

Large ribosomal subunit protein uL16