IL_9I88_050

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

9I88|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_050 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1883

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9I88|1|A|G|1356
9I88|1|A|G|1357
9I88|1|A|A|1358
9I88|1|A|A|1359
9I88|1|A|G|1360
*
9I88|1|A|C|1368
9I88|1|A|G|1369
9I88|1|A|C|1370

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL22

Chain W

Large ribosomal subunit protein uL23