IL_9I88_060

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UG*CGUUAAG

Length

9 nucleotides

Bulged bases

9I88|1|A|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_060 not in the Motif Atlas

Geometric match to IL_9DFE_060

Geometric discrepancy: 0.3152

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

9I88|1|A|U|1525
9I88|1|A|G|1526
*
9I88|1|A|C|1549
9I88|1|A|G|1550
9I88|1|A|U|1551
9I88|1|A|U|1552
9I88|1|A|A|1553
9I88|1|A|A|1554
9I88|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains