IL_9I88_062

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_062 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.1611

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9I88|1|A|G|1695
9I88|1|A|C|1696
9I88|1|A|G|1697
9I88|1|A|A|1698
9I88|1|A|A|1699
9I88|1|A|C|1700
*
9I88|1|A|G|2031
9I88|1|A|A|2032
9I88|1|A|C|2033

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein bL17