IL_9I88_065

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_065 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0654

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9I88|1|A|G|1710
9I88|1|A|G|1711
9I88|1|A|A|1712
9I88|1|A|A|1713
9I88|1|A|C|1714
9I88|1|A|U|1715
9I88|1|A|C|1716
9I88|1|A|G|1717
9I88|1|A|G|1718
*
9I88|1|A|C|2017
9I88|1|A|U|2018
9I88|1|A|G|2019
9I88|1|A|U|2020
9I88|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL14