IL_9I88_066
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- ACUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9I88|1|A|G|2019
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_066 not in the Motif Atlas
- Homologous match to IL_7A0S_062
- Geometric discrepancy: 0.1121
- The information below is about IL_7A0S_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
9I88|1|A|A|1713
9I88|1|A|C|1714
9I88|1|A|U|1715
9I88|1|A|C|1716
9I88|1|A|G|1717
9I88|1|A|G|1718
*
9I88|1|A|C|2017
9I88|1|A|U|2018
9I88|1|A|G|2019
9I88|1|A|U|2020
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein uL14
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