IL_9I88_068

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_068 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.2379

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9I88|1|A|U|1757
9I88|1|A|A|1758
9I88|1|A|G|1759
*
9I88|1|A|C|1770
9I88|1|A|A|1771
9I88|1|A|G|1772

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA