IL_9I88_078
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 9I88|1|A|A|1965, 9I88|1|A|U|1971, 9I88|1|A|C|1990
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_078 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1386
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9I88|1|A|C|1961
9I88|1|A|G|1962
9I88|1|A|A|1963
9I88|1|A|A|1964
9I88|1|A|A|1965
9I88|1|A|U|1966
9I88|1|A|U|1967
9I88|1|A|C|1968
9I88|1|A|C|1969
9I88|1|A|U|1970
9I88|1|A|U|1971
9I88|1|A|G|1972
*
9I88|1|A|C|1988
9I88|1|A|C|1989
9I88|1|A|C|1990
9I88|1|A|G|1991
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: