IL_9I88_084

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_084 not in the Motif Atlas

Geometric match to IL_8OI5_023

Geometric discrepancy: 0.1359

The information below is about IL_8OI5_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9I88|1|A|A|2123
9I88|1|A|U|2124
9I88|1|A|U|2125
*
9I88|1|A|G|2218
9I88|1|A|C|2219
9I88|1|A|U|2220

Current chains

Chain A

23S ribosomal RNA

Nearby chains