IL_9I88_101

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

9I88|1|A|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_101 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.1193

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9I88|1|A|C|2707
9I88|1|A|C|2708
9I88|1|A|U|2709
9I88|1|A|C|2710
9I88|1|A|U|2711
*
9I88|1|A|A|2752
9I88|1|A|U|2753
9I88|1|A|G|2754

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL14

Chain S

Large ribosomal subunit protein bL19