IL_9I88_103

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

9I88|1|A|U|2739, 9I88|1|A|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_103 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2118

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9I88|1|A|U|2722
9I88|1|A|U|2723
*
9I88|1|A|A|2738
9I88|1|A|U|2739
9I88|1|A|A|2740
9I88|1|A|G|2741

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein bL19