IL_9I88_122
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9I88|1|a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_122 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.4716
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9I88|1|a|G|147
9I88|1|a|G|148
9I88|1|a|A|149
9I88|1|a|U|150
9I88|1|a|A|151
9I88|1|a|A|152
9I88|1|a|C|153
*
9I88|1|a|G|168
9I88|1|a|C|169
9I88|1|a|U|170
9I88|1|a|A|171
9I88|1|a|A|172
9I88|1|a|U|173
9I88|1|a|A|174
9I88|1|a|C|175
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain u
- Small ribosomal subunit protein bS20
Coloring options: