IL_9I88_129
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UGAUGAAG*CGUAAAA
- Length
- 15 nucleotides
- Bulged bases
- 9I88|1|a|U|420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_129 not in the Motif Atlas
- Geometric match to IL_4LFB_017
- Geometric discrepancy: 0.136
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
9I88|1|a|U|417
9I88|1|a|G|418
9I88|1|a|A|419
9I88|1|a|U|420
9I88|1|a|G|421
9I88|1|a|A|422
9I88|1|a|A|423
9I88|1|a|G|424
*
9I88|1|a|C|435
9I88|1|a|G|436
9I88|1|a|U|437
9I88|1|a|A|438
9I88|1|a|A|439
9I88|1|a|A|440
9I88|1|a|A|441
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS4
Coloring options: