IL_9I88_143
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_143 not in the Motif Atlas
- Homologous match to IL_6CZR_409
- Geometric discrepancy: 0.1222
- The information below is about IL_6CZR_409
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9I88|1|a|G|681
9I88|1|a|G|682
9I88|1|a|A|683
9I88|1|a|A|684
9I88|1|a|U|685
*
9I88|1|a|G|721
9I88|1|a|G|722
9I88|1|a|A|723
9I88|1|a|A|724
9I88|1|a|C|725
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL2
- Chain g
- Small ribosomal subunit protein bS6
- Chain l
- Small ribosomal subunit protein uS11
- Chain s
- Small ribosomal subunit protein bS18
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