IL_9I88_165

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_165 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1464

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I88|1|a|C|1314
9I88|1|a|G|1315
9I88|1|a|G|1316
9I88|1|a|A|1317
9I88|1|a|U|1318
9I88|1|a|U|1319
*
9I88|1|a|A|1340
9I88|1|a|U|1341
9I88|1|a|G|1342
9I88|1|a|A|1343
9I88|1|a|A|1344
9I88|1|a|G|1345

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS13