IL_9I88_172
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UAAC*GGGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_172 not in the Motif Atlas
- Geometric match to IL_9H3G_114
- Geometric discrepancy: 0.1745
- The information below is about IL_9H3G_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9I88|1|a|U|1435
9I88|1|a|A|1436
9I88|1|a|A|1437
9I88|1|a|C|1438
*
9I88|1|a|G|1485
9I88|1|a|G|1486
9I88|1|a|G|1487
9I88|1|a|A|1488
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL14
- Chain m
- Small ribosomal subunit protein uS12
Coloring options: