IL_9I88_175

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

9I88|1|a|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_175 not in the Motif Atlas

Geometric match to IL_9DFE_082

Geometric discrepancy: 0.1003

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9I88|1|a|U|1451
9I88|1|a|G|1452
9I88|1|a|G|1453
9I88|1|a|A|1454
*
9I88|1|a|U|1471
9I88|1|a|A|1472
9I88|1|a|G|1473

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL19

Chain u

Small ribosomal subunit protein bS20