IL_9I89_009

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1283

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9I89|1|A|C|241
9I89|1|A|U|242
9I89|1|A|U|243
9I89|1|A|A|244
9I89|1|A|G|245
9I89|1|A|U|246
9I89|1|A|A|247
9I89|1|A|G|248
*
9I89|1|A|C|256
9I89|1|A|G|257
9I89|1|A|A|258
9I89|1|A|A|259
9I89|1|A|A|260
9I89|1|A|U|261
9I89|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15