IL_9I89_035

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_035 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1543

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9I89|1|A|U|1048
9I89|1|A|C|1049
9I89|1|A|C|1050
9I89|1|A|C|1051
9I89|1|A|A|1052
9I89|1|A|A|1053
9I89|1|A|A|1054
9I89|1|A|A|1055
*
9I89|1|A|U|1194
9I89|1|A|A|1195

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20