IL_9I89_057

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9I89|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_057 not in the Motif Atlas

Geometric match to IL_9E6Q_057

Geometric discrepancy: 0.2073

The information below is about IL_9E6Q_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9I89|1|A|C|1461
9I89|1|A|G|1462
9I89|1|A|A|1463
9I89|1|A|U|1464
9I89|1|A|G|1465
*
9I89|1|A|C|1624
9I89|1|A|U|1625
9I89|1|A|A|1626
9I89|1|A|G|1627

Current chains

Chain A

23S ribosomal RNA

Nearby chains