IL_9I89_072

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

9I89|1|A|U|1828, 9I89|1|A|U|1843, 9I89|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|U|1825
9I89|1|A|G|1826
9I89|1|A|C|1827
9I89|1|A|U|1828
9I89|1|A|A|1829
9I89|1|A|A|1830
9I89|1|A|A|1831
*
9I89|1|A|U|1840
9I89|1|A|G|1841
9I89|1|A|A|1842
9I89|1|A|U|1843
9I89|1|A|G|1844
9I89|1|A|U|1845
9I89|1|A|A|1846
9I89|1|A|U|1847
9I89|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA