IL_9I89_073

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9I89|1|A|C|1865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_073 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.1953

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9I89|1|A|C|1864
9I89|1|A|C|1865
9I89|1|A|G|1866
9I89|1|A|G|1867
*
9I89|1|A|C|1929
9I89|1|A|G|1930

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA