IL_9I89_098

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

9I89|1|A|A|2599, 9I89|1|A|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_098 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1107

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9I89|1|A|C|2539
9I89|1|A|A|2540
*
9I89|1|A|U|2598
9I89|1|A|A|2599
9I89|1|A|C|2600
9I89|1|A|G|2601

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3

Chain M

Large ribosomal subunit protein uL13