IL_9I89_099

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9I89|1|A|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_099 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1223

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

9I89|1|A|U|2549
9I89|1|A|G|2550
*
9I89|1|A|C|2567
9I89|1|A|A|2568
9I89|1|A|A|2569
9I89|1|A|G|2570

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain M

Large ribosomal subunit protein uL13