IL_9I89_122

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

9I89|1|a|A|129, 9I89|1|a|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_122 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.3137

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9I89|1|a|U|128
9I89|1|a|A|129
9I89|1|a|A|130
9I89|1|a|C|131
*
9I89|1|a|G|239
9I89|1|a|A|240

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein bS16

Chain r

Small ribosomal subunit protein uS17

Chain u

Small ribosomal subunit protein bS20