IL_9I89_134

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_134 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.2174

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9I89|1|a|C|512
9I89|1|a|G|513
9I89|1|a|G|514
9I89|1|a|C|515
9I89|1|a|U|516
9I89|1|a|A|517
9I89|1|a|A|518
9I89|1|a|C|519
*
9I89|1|a|G|548
9I89|1|a|G|549

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS4

Chain m

Small ribosomal subunit protein uS12