IL_9I89_161

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

9I89|1|a|U|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_161 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9I89|1|a|G|1136
9I89|1|a|U|1137
9I89|1|a|U|1138
9I89|1|a|G|1139
*
9I89|1|a|C|1156
9I89|1|a|A|1157
9I89|1|a|C|1158
9I89|1|a|U|1159
9I89|1|a|C|1160

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain j

Small ribosomal subunit protein uS9

Chain k

Small ribosomal subunit protein uS10