IL_9I89_178

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_178 not in the Motif Atlas

Geometric match to IL_8B0X_064

Geometric discrepancy: 0.1791

The information below is about IL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9I89|1|a|U|1456
9I89|1|a|A|1457
9I89|1|a|A|1458
9I89|1|a|C|1459
*
9I89|1|a|G|1467
9I89|1|a|A|1468
9I89|1|a|G|1469

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS20