IL_9IOT_007
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_007 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.0623
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9IOT|1|A|C|239
9IOT|1|A|C|240
9IOT|1|A|A|241
9IOT|1|A|G|242
9IOT|1|A|U|243
9IOT|1|A|A|244
9IOT|1|A|G|245
*
9IOT|1|A|C|253
9IOT|1|A|G|254
9IOT|1|A|A|255
9IOT|1|A|A|256
9IOT|1|A|C|257
9IOT|1|A|G|258
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL35
- Chain N
- Large ribosomal subunit protein uL15
Coloring options: