IL_9IOT_016

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9IOT|1|A|G|801, 9IOT|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0672

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|G|674
9IOT|1|A|A|675
9IOT|1|A|A|676
9IOT|1|A|A|677
9IOT|1|A|C|678
*
9IOT|1|A|G|799
9IOT|1|A|A|800
9IOT|1|A|G|801
9IOT|1|A|A|802
9IOT|1|A|U|803
9IOT|1|A|A|804
9IOT|1|A|G|805
9IOT|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain N

Large ribosomal subunit protein uL15