IL_9IOT_039

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_039 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9IOT|1|A|G|1038
9IOT|1|A|A|1039
9IOT|1|A|A|1040
9IOT|1|A|G|1041
*
9IOT|1|A|C|1114
9IOT|1|A|G|1115
9IOT|1|A|G|1116
9IOT|1|A|C|1117

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain O

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L25