IL_9IOT_046
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_046 not in the Motif Atlas
- Geometric match to IL_5J7L_292
- Geometric discrepancy: 0.0568
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9IOT|1|A|C|1351
9IOT|1|A|U|1352
9IOT|1|A|A|1353
9IOT|1|A|A|1354
9IOT|1|A|G|1355
*
9IOT|1|A|C|1376
9IOT|1|A|G|1377
9IOT|1|A|A|1378
9IOT|1|A|U|1379
9IOT|1|A|G|1380
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L34
- Chain D
- Large ribosomal subunit protein uL2
Coloring options: