IL_9IOT_121

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9IOT|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_121 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9IOT|1|a|G|147
9IOT|1|a|G|148
9IOT|1|a|A|149
9IOT|1|a|U|150
9IOT|1|a|A|151
9IOT|1|a|A|152
9IOT|1|a|C|153
*
9IOT|1|a|G|168
9IOT|1|a|C|169
9IOT|1|a|U|170
9IOT|1|a|A|171
9IOT|1|a|A|172
9IOT|1|a|U|173
9IOT|1|a|A|174
9IOT|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20