IL_9IOT_131

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_131 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0939

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9IOT|1|a|G|450
9IOT|1|a|A|451
9IOT|1|a|A|452
9IOT|1|a|G|453
9IOT|1|a|G|454
9IOT|1|a|G|455
*
9IOT|1|a|C|477
9IOT|1|a|A|478
9IOT|1|a|U|479
9IOT|1|a|U|480
9IOT|1|a|G|481
9IOT|1|a|A|482
9IOT|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16