IL_9IOT_133
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9IOT|1|a|A|532, 9IOT|1|a|U|534, 9IOT|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_133 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.152
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9IOT|1|a|G|515
9IOT|1|a|PSU|516
9IOT|1|a|G|517
9IOT|1|a|C|518
9IOT|1|a|C|519
9IOT|1|a|A|520
9IOT|1|a|G|521
*
9IOT|1|a|C|528
9IOT|1|a|G|529
9IOT|1|a|G|530
9IOT|1|a|U|531
9IOT|1|a|A|532
9IOT|1|a|A|533
9IOT|1|a|U|534
9IOT|1|a|A|535
9IOT|1|a|C|536
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
- Chain v
- Ribosome hibernation promoting factor
Coloring options: