IL_9IOT_141
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 9IOT|1|a|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_141 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.0789
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9IOT|1|a|U|662
9IOT|1|a|A|663
9IOT|1|a|G|664
9IOT|1|a|A|665
9IOT|1|a|G|666
*
9IOT|1|a|U|740
9IOT|1|a|G|741
9IOT|1|a|G|742
9IOT|1|a|A|743
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain f
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain o
- Small ribosomal subunit protein uS15
- Chain r
- Small ribosomal subunit protein bS18
- Chain u
- 30S ribosomal protein S21
Coloring options: