IL_9IOT_149
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 9IOT|1|a|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_149 not in the Motif Atlas
- Geometric match to IL_5J7L_041
- Geometric discrepancy: 0.1192
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9IOT|1|a|G|933
9IOT|1|a|C|934
9IOT|1|a|A|935
*
9IOT|1|a|U|1380
9IOT|1|a|U|1381
9IOT|1|a|C|1382
9IOT|1|a|C|1383
9IOT|1|a|C|1384
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain v
- Ribosome hibernation promoting factor
- Chain y
- Ribosome modulation factor
Coloring options: