IL_9IOT_166

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9IOT|1|a|C|1400, 9IOT|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_166 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0625

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9IOT|1|a|C|1399
9IOT|1|a|C|1400
9IOT|1|a|G|1401
*
9IOT|1|a|C|1501
9IOT|1|a|A|1502
9IOT|1|a|A|1503
9IOT|1|a|G|1504

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5

Chain v

Ribosome hibernation promoting factor

Chain y

Ribosome modulation factor