IL_9ISV_006

3D structure

PDB id

9ISV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA monomer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGGAAU*AGGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ISV_006 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.1786

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9ISV|1|A|U|175
9ISV|1|A|G|176
9ISV|1|A|G|177
9ISV|1|A|A|178
9ISV|1|A|A|179
9ISV|1|A|U|180
*
9ISV|1|A|A|541
9ISV|1|A|G|542
9ISV|1|A|G|543
9ISV|1|A|A|544
9ISV|1|A|A|545
9ISV|1|A|G|546

Current chains

Chain A

RNA (580-MER)

Nearby chains