IL_9ISV_011

3D structure

PDB id

9ISV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA monomer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAGUAG*UGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ISV_011 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.3979

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9ISV|1|A|C|347
9ISV|1|A|G|348
9ISV|1|A|A|349
9ISV|1|A|G|350
9ISV|1|A|U|351
9ISV|1|A|A|352
9ISV|1|A|G|353
*
9ISV|1|A|U|427
9ISV|1|A|G|428
9ISV|1|A|A|429
9ISV|1|A|A|430
9ISV|1|A|A|431
9ISV|1|A|G|432

Current chains

Chain A

RNA (580-MER)

Nearby chains