IL_9J1M_004
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9J1M|1|A|G|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_004 not in the Motif Atlas
- Geometric match to IL_9DFE_004
- Geometric discrepancy: 0.1039
- The information below is about IL_9DFE_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9J1M|1|A|G|81
9J1M|1|A|G|82
9J1M|1|A|G|83
9J1M|1|A|A|84
9J1M|1|A|G|85
*
9J1M|1|A|C|98
9J1M|1|A|G|99
9J1M|1|A|U|100
9J1M|1|A|G|101
9J1M|1|A|G|102
9J1M|1|A|A|103
9J1M|1|A|U|104
9J1M|1|A|C|105
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL24
- Chain Y
- Large ribosomal subunit protein uL29
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