IL_9J1M_007

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_007 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9J1M|1|A|C|241
9J1M|1|A|A|242
9J1M|1|A|A|243
9J1M|1|A|G|244
9J1M|1|A|U|245
9J1M|1|A|A|246
9J1M|1|A|G|247
*
9J1M|1|A|C|255
9J1M|1|A|G|256
9J1M|1|A|A|257
9J1M|1|A|A|258
9J1M|1|A|C|259
9J1M|1|A|G|260

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain L

Large ribosomal subunit protein uL15