IL_9J1M_016

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_016 not in the Motif Atlas

Geometric match to IL_2O3Y_004

Geometric discrepancy: 0.0873

The information below is about IL_2O3Y_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

9J1M|1|A|C|629
9J1M|1|A|U|630
9J1M|1|A|C|631
*
9J1M|1|A|G|652
9J1M|1|A|U|653
9J1M|1|A|G|654

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21