IL_9J1M_030
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_030 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.0944
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|G|985
9J1M|1|A|A|986
9J1M|1|A|G|987
9J1M|1|A|G|988
9J1M|1|A|U|989
9J1M|1|A|A|990
9J1M|1|A|G|991
*
9J1M|1|A|C|1044
9J1M|1|A|G|1045
9J1M|1|A|A|1046
9J1M|1|A|A|1047
9J1M|1|A|U|1048
9J1M|1|A|G|1049
9J1M|1|A|C|1050
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein bL25
- Chain W
- Large ribosomal subunit protein bL27
- Chain Z
- Large ribosomal subunit protein uL30
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