IL_9J1M_039

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_039 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.1076

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9J1M|1|A|C|1133
9J1M|1|A|C|1134
9J1M|1|A|C|1135
9J1M|1|A|C|1136
9J1M|1|A|C|1137
9J1M|1|A|A|1138
9J1M|1|A|A|1139
9J1M|1|A|G|1140
*
9J1M|1|A|C|1280
9J1M|1|A|G|1281

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20