IL_9J1M_041

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

9J1M|1|A|C|1271, 9J1M|1|A|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_041 not in the Motif Atlas

Geometric match to IL_4V9F_040

Geometric discrepancy: 0.074

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|C|1147
9J1M|1|A|U|1148
9J1M|1|A|A|1149
9J1M|1|A|A|1150
9J1M|1|A|G|1151
9J1M|1|A|U|1152
9J1M|1|A|G|1153
*
9J1M|1|A|C|1269
9J1M|1|A|U|1270
9J1M|1|A|C|1271
9J1M|1|A|A|1272
9J1M|1|A|A|1273
9J1M|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13