IL_9J1M_043

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9J1M|1|A|U|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_043 not in the Motif Atlas

Geometric match to IL_7A0S_038

Geometric discrepancy: 0.1366

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9J1M|1|A|G|1160
9J1M|1|A|A|1161
9J1M|1|A|U|1162
9J1M|1|A|G|1163
*
9J1M|1|A|C|1250
9J1M|1|A|G|1251
9J1M|1|A|C|1252

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain M

Large ribosomal subunit protein uL16