IL_9J1M_046

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9J1M|1|A|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_046 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.1437

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9J1M|1|A|C|1339
9J1M|1|A|A|1340
9J1M|1|A|G|1341
9J1M|1|A|C|1342
9J1M|1|A|G|1343
9J1M|1|A|A|1344
9J1M|1|A|A|1345
9J1M|1|A|G|1346
*
9J1M|1|A|U|1365
9J1M|1|A|G|1366
9J1M|1|A|G|1367
9J1M|1|A|A|1368
9J1M|1|A|G|1369

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20