IL_9J1M_053

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAA*UCUGC

Length

9 nucleotides

Bulged bases

9J1M|1|A|U|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_053 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3664

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9J1M|1|A|G|1670
9J1M|1|A|G|1671
9J1M|1|A|A|1672
9J1M|1|A|A|1673
*
9J1M|1|A|U|1794
9J1M|1|A|C|1795
9J1M|1|A|U|1796
9J1M|1|A|G|1797
9J1M|1|A|C|1798

Current chains

Chain A

23S rRNA

Nearby chains