IL_9J1M_062

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_062 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.057

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9J1M|1|A|G|1901
9J1M|1|A|G|1902
9J1M|1|A|A|1903
9J1M|1|A|A|1904
9J1M|1|A|C|1905
9J1M|1|A|U|1906
9J1M|1|A|C|1907
9J1M|1|A|G|1908
9J1M|1|A|G|1909
*
9J1M|1|A|C|2228
9J1M|1|A|U|2229
9J1M|1|A|G|2230
9J1M|1|A|U|2231
9J1M|1|A|C|2232

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14